File Watching
You might want to have your files automatically upload when they're updated completely hands-off. You can do this by running the jot watch ... command as a daemon.
Manually
You can manually run the watch command and your uploads will be completely automated as long as it stays running.
jot watch ~/jot/MyNotes/
Then, every time you update a file in your workdir, the client will upload them to the server.
Systemd Service
Alternatively, a systemd service would allow it to start upon login and be completely hands-off.
Create the following service file at $HOME/.config/systemd/user/jot-watch.service:
[Unit]
Description=Jot Watch Daemon
[Service]
ExecStart=%h/.cargo/bin/jot watch %h/jot/MyNotes
[Install]
WantedBy=default.target
Replace the binary and workdir paths as necessary.
Then start and enable the service.
systemctl start --user jot-watch
systemctl enable --user jot-waatch
Now it should start every time you login and any changed files should be uploaded immediately.